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Cytos Inc cytoscape software
Cytoscape Software, supplied by Cytos Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/cytoscape+software/cytoscape+software/pm40550626-118-8-13
Average 90 stars, based on 1 article reviews
cytoscape software - by Bioz Stars, 2026-10
90/100 stars

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Construct:

Article Title: Soil phoD-harboring bacteria mediate the soil phosphorus conversion in response to nitrogen supply in Loess Plateau
Article Snippet: Aims The microbe phoD gene, which encodes alkaline phosphatase (ALP), is crucial for mineralizing organic phosphorus (Po) to bioavailable P. However, the effect of long-term nitrogen (N) addition on the phoD-harbouring microbial-mediated P cycle and its mechanisms are poorly understood.. Methods We performed an 8-year N application experiment on alfalfa in the Loess Plateau of China.. Moreover, the soil P forms, ALP activity, and phoDharbouring microbial community characters under different N addition rates (0, 50, 100, and 150 N ha−1 yr−1) were determined.

Article Title: Bioinformatics analysis reveals shared molecular pathways for relationship between ulcerative colitis and primary sclerosing cholangitis.
Article Snippet: .. Subsequently, we constructed ceRNA network between mRNAs, miRNAs, and circRNAs by using Cytoscape software 3.9.1 (https:// cytos cape. org) [19]. ..

Software:

Article Title: Soil phoD-harboring bacteria mediate the soil phosphorus conversion in response to nitrogen supply in Loess Plateau
Article Snippet: Aims The microbe phoD gene, which encodes alkaline phosphatase (ALP), is crucial for mineralizing organic phosphorus (Po) to bioavailable P. However, the effect of long-term nitrogen (N) addition on the phoD-harbouring microbial-mediated P cycle and its mechanisms are poorly understood.. Methods We performed an 8-year N application experiment on alfalfa in the Loess Plateau of China.. Moreover, the soil P forms, ALP activity, and phoDharbouring microbial community characters under different N addition rates (0, 50, 100, and 150 N ha−1 yr−1) were determined.

Article Title: Identification and functional characterization of hub genes CLTA, EDIL3, HAPLN1, and HIP1 as diagnostic biomarkers and therapeutic targets in thyroid cancer and Hashimoto's thyroiditis.
Article Snippet: .. The PPI network was visualized using the Cytoscape software (https:// cytos cape. org/). .. To identify the most important genes within the interaction network, we applied the CytoHubba application in Cytoscape.

Article Title: From exposure to innovation: decoding aromatic amines' role in bladder cancer mechanisms.
Article Snippet: .. The network files of these five AAs in regulating BCa were sorted out and visualized with the Cytoscape software 3.10.2 (https:// www. cytos cape. org/). ..

other:

Article Title: Exosomal miR-320c: A Novel Biomarker for Atrial Cardiomyopathy.
Article Snippet: Early diagnosis and treatment of atrial cardiomyopathy(ACM) are crucial for patients with atrial fibrillation(AF), and further exploration of its biomarkers remains necessary.. High-throughput sequencing of exosomal miRNAs was performed on blood samples from patients with persistent AF (PeAF) exhibiting mild and severe left atrial fibrosis, with supraventricular tachycardia (SVT) patients.. Quantitative real-time reverse transcription polymerase chain reaction analysis validated differentially expressed miRNAs (DE miRNAs) from severe left atrial fibrosis PeAF, SVT and health controls.

Article Title: Shared hub genes in membranous nephropathy and kidney renal clear cell carcinoma: investigating molecular overlap and tumor progression.
Article Snippet: To investigate functional interactions among the identified common DEGs, we constructed a PPI network using STRING (https:// string- db. org) [33] and visualized it in Cytoscape software (https:// cytos cape. org).

Article Title: Bioinformatics analysis reveals shared molecular pathways for relationship between ulcerative colitis and primary sclerosing cholangitis.
Article Snippet: 2.4 PPI network analysis, top cluster, and hub genes identification STRING database (https:// string- db. org) was used to construct PPI network, and results were visualized using Cytoscape software (https:// cytos cape. org; version 3.9.1).

Article Title: Maternal Nutritional Status Governs Fetal Development by Modulating Imprinting Gene GAB1-Mediated Trophoblast Differentiation in the Placenta.
Article Snippet: The PPI network diagram was constructed using the Cytoscape software (version 3.9.1; https:// cytos cape. org/ ).

Protein-Protein interactions:

Article Title: Identification and functional characterization of hub genes CLTA, EDIL3, HAPLN1, and HIP1 as diagnostic biomarkers and therapeutic targets in thyroid cancer and Hashimoto's thyroiditis.
Article Snippet: .. The PPI network was visualized using the Cytoscape software (https:// cytos cape. org/). .. To identify the most important genes within the interaction network, we applied the CytoHubba application in Cytoscape.



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